O. Kimchi*, B. B. Larsen*, O. R. S. Dunkley, A. J. W. te Velthuis, C. A. Myhrvold. RNA structure modulates Cas13 activity and enables mismatch detection. bioRxiv. PDF
L. A. Becker, S. A. Quinodoz, T. J. Comi, O. Kimchi, D. A. Knowles, C. P. Brangwynne. Genome-wide mapping of mesoscale neuronal RNA organization and condensation. bioRxiv. PDF
T. K. Chiang, O. Kimchi, H. K. Dhaliwal, D. A. Villarreal, F. F. Vasquez, V. Manoharan, M. P. Brenner, R. Garmann. Measuring intramolecular connectivity in long RNA molecules using two-dimensional DNA patch–probe arrays. Nucleic Acids Research 53(11) (2025). PDF
O. Kimchi, Y. Meir, N. S. Wingreen. Bacterial defense and phage counter-defense lead to coexistence in a modeled ecosystem. Proceedings of the National Academy of Sciences, USA 121(44) (2024). PDF
O. Kimchi, Y. Meir, N. S. Wingreen. Lytic and temperate phage naturally coexist in a dynamic population model. The ISME Journal 18(1) (2024). PDF
O. Kimchi†, E. M. King, M. P. Brenner. Uncovering the mechanism for aggregation in repeat expanded RNA reveals a reentrant transition. Nature Communications 14 (2023). Selected for Editor’s Highlights. PDF
A. I. Curatolo, O. Kimchi, C. P. Goodrich, R. K. Krueger, M. P. Brenner. A computational toolbox for the assembly yield of complex, heterogeneous structures. Nature Communications 14 (2023). PDF
O. Kimchi†, M. P. Brenner, L. J. Colwell. RNA structure prediction including pseudoknots through direct enumeration of states: A user’s guide to the LandscapeFold algorithm. RNA structure prediction, Methods in Molecular Biology Springer (2022). PDF
O. Kimchi†, C. P. Goodrich, A. Courbet, A. I. Curatolo, N. B. Woodall, D. Baker, M. P. Brenner. Self-assembly–based posttranslational protein oscillators. Science Advances 6(51) (2020). PDF
J. Kames, D.D. Holcomb, O. Kimchi, M. DiCuccio, N. Hamasaki-Katagiri, T. Wang, A. A. Komar, A. Alexaki, C. Kimchi-Sarfaty. Sequence analysis of SARS-CoV-2 genome reveals features important for vaccine design. Scientific Reports 10 (2020). PDF
O. Kimchi†, T. Cragnolini, M. P. Brenner, L. J. Colwell†. A polymer physics framework for the entropy of arbitrary pseudoknots. Biophysical Journal 117(3) (2019). PDF
O. Kimchi, S. L. Veatch, B. B. Machta. Ion channels can be allosterically regulated by membrane domains near a de-mixing critical point. Journal of General Physiology 150(12) (2018). Selected for cover. PDF
M. Watts, J. Ha, O. Kimchi, A. Sherman. Paracrine regulation of glucagon secretion: the β/α/δ model. American Journal of Physiology—Endocrinology & Metabolism 310(8) (2016). PDF