Mapping free energy landscapes with
radial basis functions
Luca Maragliano (CIMS)
Free energy calculations are of central importance in Molecular
Dynamics (MD) simulations. Most of the currently used techniques rely
on regularly spaced grids and/or extensive sampling, and they become
inadequate when the free energy we want to compute is in more than two
dimensions. I will describe a new method to map free energy landscapes
in several dimensions based on an variational interpolation technique
using radial-basis functions. The method will be illustrated on simple
examples and then used in a MD example to reconstruct the four
dimensional free energy landscape of the solvated alanine dipeptide
molecule.
The work is joint with Eric Vanden-Eijnden.