H.-Y. Wang, T. Elston, A. Mogilner, G.Oster, Force generation in RNA Polymerase, Biophysical Journal , 74 , 1186-1202 (1998) preprint in pdf format

A. Mogilner, G.Oster, The polymerization ratchet model explains the force-velocity relation for growing microtubules, European Biophysical Journal 28 , 235-242 (1999) preprint in pdf format

A. Mogilner, M. Mangel, R.J. Baskin, Motion of molecular motor ratcheted by internal fluctuations and protein friction, Physics Letters A 237 , 297-306 (1998) preprint in pdf format

A.Mogilner, A.J.Fisher, R.J.Baskin, Structural changes in the neck linker of kinesin explain the load dependence of the motor's mechanical cycle, J.Theor.Biol. 211 , 143-157 (2001) preprint in pdf format

E. Cytrynbaum, J. Scholey, A. Mogilner, Force balance model of early spindle pole separation in Drosophila Embryos, Biophysical Journal , 84 , 757-769 (2003) preprint in pdf format

E. Cytrynbaum, V. Rodionov, A. Mogilner, Computational model of dynein-dependent self-organization of microtubule asters. J. Cell Sci., 117 , 1381-1397 (2004)
preprint in pdf format

I. Brust-Mascher, G. Civelekoglu-Scholey, M. Kwon, A. Mogilner and J. M. Scholey, Model for anaphase B: Role of three mitotic motors in a switch from poleward flux to spindle elongation, PNAS , 101 , 15938-15943 (2004) preprint in pdf format

R. Wollman, E. N. Cytrynbaum, J. T. Jones, T. Meyer, J.M. Scholey, A. Mogilner, Efficient chromosome capture requires a bias in the "Search-and-Capture" process during mitotic spindle assembly, Curr. Biol. , 15 , 828-832 (2005) preprint in pdf format

E. N. Cytrynbaum, P. Sommi, I. Brust-Mascher, J.M. Scholey, A. Mogilner, Early Spindle Assembly in Drosophila Embryos: Role of a Force-balance Involving Cytoskeletal Dynamics and Nuclear Mechanics, Mol. Biol. Cell., 16 , 4967-4981 (2005) preprint in pdf format

V. Malikov, E. N. Cytrynbaum, A. Kashina, A. Mogilner, V. Rodionov, Centering of a radial microtubule array by translocation along microtubules spontaneously nucleated in the cytoplasm, Nature Cell Biology, 7 , 1213-1218 (2005) preprint in pdf format

G. Civelekoglu-Scholey, D. J. Sharp, A. Mogilner, J. Scholey, Model of chromosome motility in Drosophila embryos: Adaptation of a general mechanism for rapid mitosis, Biophysical Journal , 90 , 3966-3982 (2006) preprint in pdf format

E. N. Cytrynbaum, V. Rodionov, A. Mogilner, Nonlocal mechanism of self-organization and centering of microtubule asters, Bull. Math. Biol., 68 , 1053?1072 (2006) preprint in pdf format

X. Pan, G. Ou, G. Civelekoglu-Scholey, O. E. Blacque, N. F. Endres, L. Tao, A. Mogilner, M. R. Leroux, R. D. Vale, J. M. Scholey, Mechanism of transport of IFT-particles in C. elegans cilia by the concerted action of kinesin-II and OSM-3 motors, J. Cell Biol., 174: 1035-1045 (2006) preprint in pdf format

L. Tao, A. Mogilner, G. Civelekoglu-Scholey, R. Wollman, J. Evans, H. Stahlberg, J. M. Scholey, The homotetrameric kinesin-5, KLP61F, forms crossbridges between Microtubules and antagonizes Ncd in Motility Assays, Curr. Biol., 16: 2293-2302 (2006) preprint in pdf format

D. K. Cheerambathur, G. Civelekoglu-Scholey, I. Brust-Mascher, P. Sommi, A. Mogilner, J. M. Scholey, Quantitative analysis of an anaphase B switch: predicted role for a microtubule catastrophe gradient. J. Cell Biol., 177: 995-1004 (2007) preprint in pdf format

R. Wollman, G. Civelekoglu-Scholey, J. M. Scholey, A. Mogilner, Reverse engineering of force integration during mitosis in the Drosophila embryo. Mol. Syst. Biol., 4: 195 (2008) preprint in pdf format

A. Zemel, A. Mogilner, Motor-induced sliding of microtubule and actin bundles Phys. Chem. Chem. Phys., 11: 4821-4833 (2009) preprint in pdf format

B. Rubinstein, K. Larripa, P. Sommi and A. Mogilner, Elasticity of motor-microtubule bundles and shape of the mitotic spindle, Phys. Biol., 6: 016005 (2009). preprint in pdf format

Raja Paul, Roy Wollman, William T. Silkworth, Isaac K. Nardi, Daniela Cimini, Alex Mogilner. Computer simulations predict that chromosome movements and rotations accelerate mitotic spindle assembly without compromising accuracy, PNAS, 106: 15708-1513 (2009). preprint in pdf format

N. P. Ferenz, R. Paul, C. Fagerstrom, A. Mogilner, P. Wadsworth, Dynein Antagonizes Eg5 by Crosslinking and Sliding Antiparallel Microtubules, Curr. Biol., 19 : 1833-1838 (2009). preprint in pdf format

A. Kunwar, A. Mogilner, Robust transport by multiple motors with nonlinear force-velocity relations and stochastic load sharing, Phys. Biol., 7 : 016012 (2010). preprint in pdf format

P. Sommi, R. Ananthakrishnan, D. K. Cheerambathur, M. Kwon, S. Morales-Mulia, I. Brust-Mascher, A. Mogilner, A Mitotic Kinesin-6, PavKLP, Mediates Interdependent Cortical Reorganization and Spindle Dynamics in Drosophila Embryos, J Cell Sci., 123: 1862-1872 (2010). preprint in pdf format

J. Zhu, A. Burakov, V. Rodionov, A. Mogilner, Finding the cell center by a balance of dynein and myosin pulling and microtubule pushing: a computational study, Mol. Biol. Cell, 21 , 4418-4427 (2010). preprint in pdf format

E M Craig, S Dey and A Mogilner, Emergence of sarcomeric, graded-polarity and spindle-like patterns in bundles of short cytoskeletal polymers and two opposite molecular motors, J Phys: Condens Matter, 23 : 374102 (2011). preprint in pdf format

P. Sommi, D.K. Cheerambathur, I. Brust-Mascher, A. Mogilner, Actomyosin-dependent cortical dynamics contributes to the prophase force-balance in the early Drosophila embryo, PLoS One, 6: e18366 (2011). preprint in pdf format

Valentin Magidson, Christopher B. O'Connell, Raja Paul, Jadranka Loncarek, Alex Mogilner and Alexey Khodjakov, Spatial arrangement of chromosomes during prometaphase accelerates spindle assembly, Cell, 146: 555-567 (2011). preprint in pdf format

Ambarish Kunwar, Suvranta K. Tripathy, Jing Xu, Michelle Mattson, Roby Sigua, Richard McKinney, Clare Yu,3, Alex Mogilner, and Steven P. Gross, Mechanical stochastic tug-of-war models cannot explain bidirectional lipid-droplet transport, PNAS, 108: 18960-18965 (2011). preprint in pdf format

William T. Silkworth, Isaac K. Nardi, Raja Paul, Alex Mogilner, Daniela Cimini, Timing of centrosome separation is important for accurate chromosome segregation, Mol. Biol. Cell, 23: 401-411 (2012). preprint in pdf format

Vinogradova T, Paul R, Grimaldi AD, Loncarek J, Miller PM, Yampolsky D, Magidson V, Khodjakov A, Mogilner A, Kaverina I., Concerted effort of centrosomal and Golgi-derived microtubules is required for proper Golgi complex assembly but not maintenance, Mol. Biol. Cell, 23: 820-833 (2012). preprint in pdf format

Jonathan N. Thon, Hannah Macleod, Antonija Jurak Begonja, Jie Zhu, Kun-Chun Lee, Alex Mogilner, John H. Hartwig, Joseph E. Italiano Jr. Microtubule and cortical forces determine platelet size during vascular platelet production. Nat. Commun., 3: 852 (2012). preprint in pdf format

Valentin Magidson, Raja Paul, Nachen Yang, Jeffrey Ault, Christopher O'Connell, Bruce McEwen, Alex Mogilner, and Alexey Khodjakov. Adaptive changes in the kinetochore architecture facilitate proper spindle assembly Nat Cell Biol, 17: 1134-44 (2015). preprint in pdf format