Home
CV
Research
Publications
Courses
Teaching
Links
Links
Work Links
:
New York University.
Courant Institute of Mathematical Sciences.
NYU Bioinformatics Group.
NYU
C
entre for
C
atastrophe
P
reparedness and
R
esponse (CCPR).
University of Catania.
IPPARI Research Centre.
Department of Mathematics and Computer Science.
AICOM
:
A
rtificial
I
ntelligence and
CO
mputational
M
ethodologies group
Genome sequence assembly
:
AMOS - A Modular Open-Source Assembler
Celera Assembler
Arachne Assembler
Euler Assembler
TIGR Assembler
Phrap Assembler
CAP3 Assembler
Velvet - sequence assembler for very short reads
MUMmer - Ultra-fast alignment of large-scale DNA and protein sequences
Benchmark Data for Genome Assembly
Agent modeling toolkits
:
Recursive Porous Agent Simulation Toolkit (Repast).
Swarm platform for agent-based models.
Multi-Agent Simulator Of Neighborhoods... or Networks... or something... (MASON)
NetLogo is a cross-platform multi-agent programmable modeling environment.
StarLogo programmable modeling environment for exploring the behaviors of decentralized systems
Protein Folding and Protein Structure Prediction
:
The RCSB Protein Data Bank (PDB).
Protein Structure Prediction Center.
EValuation of Automatic protein structure prediction (EVA).
Molecular Modeling and Simulation software
:
SMMP (Simple Molecular Mechanics for Proteins) package.
TINKER Molecular Modeling Package.
Chemistry at HARvard Molecular Mechanics (CHARMM).
GROMACS.
Copyright © 2010
Giuseppe Narzisi
